PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016510136.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 517aa    MW: 57416 Da    PI: 4.1454
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016510136.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.4e-07253299346
                      SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46 
                      +W++eE+el+ ++v   +       W+  a +++  R++++++s++++
   XP_016510136.1 253 KWSEEEEELFHEVVLSNPASvgknFWNHLAIEFP-SRSREELVSYYFN 299
                      8*************9988778888**********.***********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0017250303IPR001005SANT/Myb domain
PfamPF002495.3E-6253299IPR001005SANT/Myb domain
CDDcd001670.00628253299No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MELQPSXSKQ PRHEPSCQIV SVLELSRESV AVKAYASGGD EENSSSINPD ADNELDSHNV  60
AEALFSSGKE TDMCIYGSAS NSSWPTSCTS EEDIRPEAPF HILMSPEYYY FDHPFRGAAH  120
HGEMYSSLLS DPPQKMVPIG PDFQAELPEW GAFVNQDKPY MEGMRETMCP SSQADENKLA  180
GTSIIPMPAM ELCADNGENI VERGGECSCE DIGSIRCVRL HIMEAREKLK LALGEETFFR  240
LGFCDMGEVV AEKWSEEEEE LFHEVVLSNP ASVGKNFWNH LAIEFPSRSR EELVSYYFNA  300
FILRKRAEQN RLDPLHIDSD NDEWLEIVGD AAQEANMTDE DEESVVESPA YHNDLIGNGI  360
HEELDKHDED GGDATWEDYK ALNFGSRKVF TDVPESCPGE LFDSNSSYKL SLQPQDQGLS  420
NKVVKQEVQD GSCTTVAAGV TSESSLGQTN NGKRWANDIT GMGSGIEHDR VLGPCGGKEW  480
DVGYLSCARN EVDLLPTRTM IEEVFGDGAW IYKSRDG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016510136.10.0PREDICTED: uncharacterized protein LOC107827505
TrEMBLM1CA300.0M1CA30_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000631090.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15141625